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Resource ValueSet/FHIR Server from package us.nlm.vsac#0.21.0 (141 ms)

Package us.nlm.vsac
Type ValueSet
Id Id
FHIR Version R4
Source http://fhir.org/packages/us.nlm.vsac/https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.1002/expansion
Url http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1002
Version 20230602
Status active
Date 2023-06-02T01:03:51-04:00
Name TuberculosisTestsForMycobacteriumSpeciesByCultureAndIdentificationMethod
Title Tuberculosis (Tests for Mycobacterium species by Culture and Identification Method)
Experimental False
Realm us
Authority hl7
Purpose (Clinical Focus: This set of values contains codes for laboratory test names associated with detecting the presence of Mycobacterium species in culture),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: component: Mycobacterium sp isolate / culture; Mycobacterium tuberculosis complex isolate / culture; LOINC search: "Mycobacterium (avium or bovis or sp or abscessus or avium complex or kansaii or leprae) (culture or isolate) -panel -interpretation"),(Exclusion Criteria: none)

Resources that use this resource

No resources found


Resources that this resource uses

CodeSystem
http://loinc.org LOINC Code System
http://loinc.org LOINC 2.76
http://loinc.org LOINC codes used in this IG


Source

{
  "resourceType" : "ValueSet",
  "id" : "2.16.840.1.113762.1.4.1146.1002",
  "meta" : {
    "versionId" : "32",
    "lastUpdated" : "2023-12-21T17:43:03.000-05:00",
    "profile" : [
      "http://hl7.org/fhir/StructureDefinition/shareablevalueset",
      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/computable-valueset-cqfm",
      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/publishable-valueset-cqfm"
    ]
  },
  "extension" : [
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/valueset-author",
      "valueContactDetail" : {
        "name" : "CSTE Author"
      }
    },
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/valueset-keyWord",
      "valueString" : "G_Respiratory,Trigger,Tuberculosis"
    },
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate",
      "valueDate" : "2024-06-05"
    },
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/valueset-effectiveDate",
      "valueDate" : "2023-06-02"
    }
  ],
  "url" : "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1002",
  "identifier" : [
    {
      "system" : "urn:ietf:rfc:3986",
      "value" : "urn:oid:2.16.840.1.113762.1.4.1146.1002"
    }
  ],
  "version" : "20230602",
  "name" : "TuberculosisTestsForMycobacteriumSpeciesByCultureAndIdentificationMethod",
  "title" : "Tuberculosis (Tests for Mycobacterium species by Culture and Identification Method)",
  "status" : "active",
  "date" : "2023-06-02T01:03:51-04:00",
  "publisher" : "CSTE Steward",
  "jurisdiction" : [
    {
      "coding" : [
        {
          "system" : "urn:iso:std:iso:3166",
          "code" : "US"
        }
      ]
    }
  ],
  "purpose" : "(Clinical Focus: This set of values contains codes for laboratory test names associated with detecting the presence of Mycobacterium species in culture),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: component: Mycobacterium sp isolate / culture; Mycobacterium tuberculosis complex isolate / culture; \n\nLOINC search: \"Mycobacterium (avium or bovis or sp or abscessus or avium complex or kansaii or leprae) (culture or isolate) -panel -interpretation\"),(Exclusion Criteria: none)",
  "compose" : {
    "include" : [
      {
        "system" : "http://loinc.org",
        "concept" : [
          {
            "code" : "20892-6",
            "display" : "Mycobacterium avium ss paratuberculosis [Presence] in Tissue by Organism specific culture"
          },
          {
            "code" : "20893-4",
            "display" : "Mycobacterium avium ss paratuberculosis [Presence] in Stool by Organism specific culture"
          },
          {
            "code" : "24427-7",
            "display" : "Mycobacterium avium ss paratuberculosis [Presence] in Specimen by Organism specific culture"
          },
          {
            "code" : "30045-9",
            "display" : "Mycobacterium sp identified in Dialysis fluid by Organism specific culture"
          },
          {
            "code" : "35352-4",
            "display" : "Mycobacterium tuberculosis genotype [Identifier] in Isolate"
          },
          {
            "code" : "42716-1",
            "display" : "Mycobacterium sp rRNA [Identifier] in Isolate by NAA with probe detection"
          },
          {
            "code" : "42717-9",
            "display" : "Mycobacterium tuberculosis complex genotype [Identifier] in Isolate"
          },
          {
            "code" : "44851-4",
            "display" : "Mycobacterium sp # 2 identified in Specimen by Organism specific culture"
          },
          {
            "code" : "44852-2",
            "display" : "Mycobacterium sp # 3 identified in Specimen by Organism specific culture"
          },
          {
            "code" : "44854-8",
            "display" : "Mycobacterium sp # 4 identified in Specimen by Organism specific culture"
          },
          {
            "code" : "44855-5",
            "display" : "Mycobacterium sp # 5 identified in Specimen by Organism specific culture"
          },
          {
            "code" : "50941-4",
            "display" : "Mycobacterium sp [Presence] in Specimen by Organism specific culture"
          },
          {
            "code" : "532-2",
            "display" : "Mycobacterium sp identified in Aspirate by Organism specific culture"
          },
          {
            "code" : "533-0",
            "display" : "Mycobacterium sp identified in Blood by Organism specific culture"
          },
          {
            "code" : "534-8",
            "display" : "Mycobacterium sp identified in Cerebral spinal fluid by Organism specific culture"
          },
          {
            "code" : "535-5",
            "display" : "Mycobacterium sp identified in Body fluid by Organism specific culture"
          },
          {
            "code" : "536-3",
            "display" : "Mycobacterium sp identified in Bone marrow by Organism specific culture"
          },
          {
            "code" : "537-1",
            "display" : "Mycobacterium sp identified in Peritoneal fluid by Organism specific culture"
          },
          {
            "code" : "538-9",
            "display" : "Mycobacterium sp identified in Synovial fluid by Organism specific culture"
          },
          {
            "code" : "539-7",
            "display" : "Mycobacterium sp identified in Sputum by Organism specific culture"
          },
          {
            "code" : "53909-8",
            "display" : "Mycobacterium sp identified in Pleural fluid by Organism specific culture"
          },
          {
            "code" : "540-5",
            "display" : "Mycobacterium sp identified in Tissue by Organism specific culture"
          },
          {
            "code" : "541-3",
            "display" : "Mycobacterium sp identified in Urine by Organism specific culture"
          },
          {
            "code" : "542-1",
            "display" : "Mycobacterium sp identified in Wound by Organism specific culture"
          },
          {
            "code" : "543-9",
            "display" : "Mycobacterium sp identified in Specimen by Organism specific culture"
          },
          {
            "code" : "614-8",
            "display" : "Mycobacterial strain [Type] in Isolate by Mycobacterial subtyping"
          },
          {
            "code" : "64412-0",
            "display" : "Mycobacterium sp [Presence] in Blood by Organism specific culture"
          },
          {
            "code" : "67725-2",
            "display" : "Mycobacterium sp identified in Isolate by HPLC"
          },
          {
            "code" : "72863-4",
            "display" : "Mycobacterium leprae gyrB gene fluoroquinolone resistance mutation [Presence] by Molecular method"
          },
          {
            "code" : "72868-3",
            "display" : "Mycobacterium leprae folP1 gene dapsone resistance mutation [Presence] by Molecular method"
          },
          {
            "code" : "72869-1",
            "display" : "Mycobacterium leprae gyrA gene fluoroquinolone resistance mutation [Presence] by Molecular method"
          },
          {
            "code" : "72870-9",
            "display" : "Mycobacterium leprae rpoB gene rifAMPin resistance mutation [Presence] by Molecular method"
          },
          {
            "code" : "76687-3",
            "display" : "Mycobacterium sp identified in Bronchoalveolar lavage by Organism specific culture"
          },
          {
            "code" : "77734-2",
            "display" : "Mycobacterium abscessus complex clarithromycin resistance erm(41) full length gene [Presence] by Molecular method"
          },
          {
            "code" : "77735-9",
            "display" : "Mycobacterium abscessus complex clarithromycin resistance erm(41) truncated gene [Presence] by Molecular method"
          },
          {
            "code" : "83066-1",
            "display" : "Mycobacterium tuberculosis complex immunogenic protein MPB64 [Presence] in Isolate by Immunoassay"
          },
          {
            "code" : "88167-2",
            "display" : "Mycobacterium sp identified in Cornea or Conjunctiva by Organism specific culture"
          },
          {
            "code" : "88168-0",
            "display" : "Mycobacterium sp identified in Ocular fluid by Organism specific culture"
          },
          {
            "code" : "88183-9",
            "display" : "Mycobacterium sp identified in Isolate by Sequencing"
          },
          {
            "code" : "88266-2",
            "display" : "Mycobacterium sp rRNA [Identifier] by Probe in Positive blood culture"
          },
          {
            "code" : "88874-3",
            "display" : "Mycobacterium tuberculosis complex DNA [Presence] in Isolate or Specimen by Molecular genetics method"
          },
          {
            "code" : "89636-5",
            "display" : "Mycobacterium sp identified in Lower respiratory specimen by Organism specific culture"
          },
          {
            "code" : "90284-1",
            "display" : "Mycobacterium sp identified in Bile fluid by Organism specific culture"
          },
          {
            "code" : "90433-4",
            "display" : "Mycobacterium preliminary growth [Presence] in Sputum by Organism specific culture"
          },
          {
            "code" : "90438-3",
            "display" : "Mycobacterium preliminary growth [Presence] in Tissue by Organism specific culture"
          },
          {
            "code" : "91590-0",
            "display" : "Mycobacterium preliminary growth [Presence] in Body fluid by Organism specific culture"
          },
          {
            "code" : "94576-6",
            "display" : "Mycobacterium tuberculosis complex species identified in Isolate by NAA with probe detection"
          },
          {
            "code" : "9823-6",
            "display" : "Mycobacterium sp identified in Bronchial specimen by Organism specific culture"
          },
          {
            "code" : "9824-4",
            "display" : "Mycobacterium sp identified in Gastric fluid by Organism specific culture"
          },
          {
            "code" : "9825-1",
            "display" : "Mycobacterium sp identified in Isolate"
          }
        ]
      }
    ]
  },
  "expansion" : {
    "identifier" : "urn:uuid:303f612b-5302-4a18-a59f-7e43ee7361d8",
    "timestamp" : "2024-12-10T06:26:33-05:00",
    "total" : 50,
    "contains" : [
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        "system" : "http://loinc.org",
        "version" : "2.78",
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        "display" : "Mycobacterium avium ss paratuberculosis [Presence] in Tissue by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "20893-4",
        "display" : "Mycobacterium avium ss paratuberculosis [Presence] in Stool by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "24427-7",
        "display" : "Mycobacterium avium ss paratuberculosis [Presence] in Specimen by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "30045-9",
        "display" : "Mycobacterium sp identified in Dialysis fluid by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
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      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
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        "version" : "2.78",
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      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "44852-2",
        "display" : "Mycobacterium sp # 3 identified in Specimen by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "44854-8",
        "display" : "Mycobacterium sp # 4 identified in Specimen by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "44855-5",
        "display" : "Mycobacterium sp # 5 identified in Specimen by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "50941-4",
        "display" : "Mycobacterium sp [Presence] in Specimen by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "532-2",
        "display" : "Mycobacterium sp identified in Aspirate by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "533-0",
        "display" : "Mycobacterium sp identified in Blood by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "534-8",
        "display" : "Mycobacterium sp identified in Cerebral spinal fluid by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "535-5",
        "display" : "Mycobacterium sp identified in Body fluid by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "536-3",
        "display" : "Mycobacterium sp identified in Bone marrow by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "537-1",
        "display" : "Mycobacterium sp identified in Peritoneal fluid by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "538-9",
        "display" : "Mycobacterium sp identified in Synovial fluid by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "539-7",
        "display" : "Mycobacterium sp identified in Sputum by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "53909-8",
        "display" : "Mycobacterium sp identified in Pleural fluid by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "540-5",
        "display" : "Mycobacterium sp identified in Tissue by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "541-3",
        "display" : "Mycobacterium sp identified in Urine by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "542-1",
        "display" : "Mycobacterium sp identified in Wound by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "543-9",
        "display" : "Mycobacterium sp identified in Specimen by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "614-8",
        "display" : "Mycobacterial strain [Type] in Isolate by Mycobacterial subtyping"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "64412-0",
        "display" : "Mycobacterium sp [Presence] in Blood by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "67725-2",
        "display" : "Mycobacterium sp identified in Isolate by HPLC"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "72863-4",
        "display" : "Mycobacterium leprae gyrB gene fluoroquinolone resistance mutation [Presence] by Molecular method"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "72868-3",
        "display" : "Mycobacterium leprae folP1 gene dapsone resistance mutation [Presence] by Molecular method"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "72869-1",
        "display" : "Mycobacterium leprae gyrA gene fluoroquinolone resistance mutation [Presence] by Molecular method"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "72870-9",
        "display" : "Mycobacterium leprae rpoB gene rifAMPin resistance mutation [Presence] by Molecular method"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "76687-3",
        "display" : "Mycobacterium sp identified in Bronchoalveolar lavage by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "77734-2",
        "display" : "Mycobacterium abscessus complex clarithromycin resistance erm(41) full length gene [Presence] by Molecular method"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "77735-9",
        "display" : "Mycobacterium abscessus complex clarithromycin resistance erm(41) truncated gene [Presence] by Molecular method"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "83066-1",
        "display" : "Mycobacterium tuberculosis complex immunogenic protein MPB64 [Presence] in Isolate by Immunoassay"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "88167-2",
        "display" : "Mycobacterium sp identified in Cornea or Conjunctiva by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "88168-0",
        "display" : "Mycobacterium sp identified in Ocular fluid by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "88183-9",
        "display" : "Mycobacterium sp identified in Isolate by Sequencing"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "88266-2",
        "display" : "Mycobacterium sp rRNA [Identifier] by Probe in Positive blood culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "88874-3",
        "display" : "Mycobacterium tuberculosis complex DNA [Presence] in Isolate or Specimen by Molecular genetics method"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "89636-5",
        "display" : "Mycobacterium sp identified in Lower respiratory specimen by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "90284-1",
        "display" : "Mycobacterium sp identified in Bile fluid by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "90433-4",
        "display" : "Mycobacterium preliminary growth [Presence] in Sputum by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "90438-3",
        "display" : "Mycobacterium preliminary growth [Presence] in Tissue by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "91590-0",
        "display" : "Mycobacterium preliminary growth [Presence] in Body fluid by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "94576-6",
        "display" : "Mycobacterium tuberculosis complex species identified in Isolate by NAA with probe detection"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "9823-6",
        "display" : "Mycobacterium sp identified in Bronchial specimen by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "9824-4",
        "display" : "Mycobacterium sp identified in Gastric fluid by Organism specific culture"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "9825-1",
        "display" : "Mycobacterium sp identified in Isolate"
      }
    ]
  },
  "text" : {
  }
}

XIG built as of ??metadata-date??. Found ??metadata-resources?? resources in ??metadata-packages?? packages.